1. “Elucidating the Mechanisms of SA-4-1BBL Immunoprevention Through Advanced Informatics Approaches.” Mohit Verma, Feyza Nur Arguc, Pallav Singh, Sameep Dhakal, Yen On Chan, Manish Sridhar, Sabin Dahal, Vahap Ulker, Mohammad Tarique, Tariq Malik, Lalit Batra, Esma S. Yolcu, Haval Shirwan, Trupti Joshi (Submitted in PLosONE Computational Biology)
2. “Childhood Asthma Biomarkers Derived from Plasma and Saliva Exosomal miRNAs” Khalyfa, Abdelnaby, Mohit Verma, Meghan M. Alexander, Zhuanhong Qiao, Tammy Rood, Ragini Kapoor, Trupti Joshi, David Gozal, and Benjamin D. Francisco. International Journal of Molecular Sciences 26, no. 15: 7043. https://doi.org/10.3390/ijms26157043
3. “Mavis: An R software for Mean-Variance Modeling in label-free proteomics data” Philip Berg, Asanka Duwage, Mohit Verma, and George Popescu (Submitted in Briefings in Bioinformatics).
4. “Co-Expression Network Dissection of Growth and Proteomic Responses in Cowpea Genotypes under Early-Stage Drought Stress” Mohammad A. Ghanbari1,¶ Mohit Verma 1,2,¶, Xin Ye 3,¶, Nagib Ahsan 4, Omolayo Olorunwa 5, Ainong Shi 6, Casey Barickman 7, Sorina Popescu3, George Popescu 1,3(In Preparation)
5. “Unraveling the molecular landscape of waterlogging stress in cowpea (Vigna unguiculata (L.) Walp.): integrative transcriptomics, co-expression networks, and machine learning insights” Mohammad A. Ghanbari, Mohit Verma, Omolayo J Olorunwa, Sorina C. Popescu, T. Casey Barickman, George V. Popescu
6. “Multi-omics-based insights into tomato adaptation to multifactorial stress combination” Lidia S Pascual, Enrique Serna, Abdul Ghani, Zhen Lyu, Manish Sridhar Immadi, Trupti Joshi, Mohit Verma, José L Rambla, Aurelio Gómez-Cadenas, Ron Mittler, Sara I Zandalinas. Plant Physiology, 2025; kiaf519, https://doi.org/10.1093/plphys/kiaf519
7. “Transcriptomic and physiological responses of soybean plants subjected to a combination of water deficit and heat stress under field conditions” Ranjita Sinha, María Ángeles Peláez-Vico, Ronald Jr. Myers, Sameep Dhakal, Abdul Ghani, Mohit Verma, Ben Shostak, Andrew Ogden, C. Bennet Krueger, Jose R. Costa Netto, Sara I. Zandalinas, Trupti Joshi, Felix B. Fritschi, Ron Mittler. Physiologia plantarum vol. 177,5 (2025): e70584. doi:10.1111/ppl.70584
8. “Harnessing Single-Cell Omics for the Future of Crop Science: Innovations, Challenges, and Path Forward. Book Chapter. Saurabh Gupta, Mohit Verma, Aamir Wasim Khan” (Book Chapter In preparation)
9. “Small and Long Non-Coding RNA Analysis for Human Trophoblast-Derived Extracellular Vesicles and Their Effect on the Transcriptome Profile of Human Neural Progenitor Cells” Jessica A. Kinkade, Pallav Singh, Mohit Verma, Teka Khan, Toshihiko Ezashi, Nathan J. Bivens, R. Michael Roberts, Trupti Joshi, Cheryl S. Rosenfeld. Cells vol. 13,22 1867. 11 Nov. 2024, doi:10.3390/cells13221867
10. “Impact of Extracellular Vesicles Derived from Human Placenta Cells on Neural Progenitor Cell Transcriptome Dynamics.” Pallav Singh, Jessica A. Kinkade, Mohit Verma, Teka Khan, Toshihiko Ezashi, Nathan J. Bivens, R. Michael Roberts, Trupti Joshi, Cheryl S. Rosenfeld. 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Lisbon, Portugal, 2024, pp. 457-462, doi: 10.1109/BIBM62325.2024.10822491.
12. “Dynamics of the drought-related transcriptional responses in sweet potato roots and leaves” Ferrell D, Verma M, Dimlioglu G, Youngblood C, Duke M, Liu F, Scheffler B, Reddy KR, Shankle, MC., Popescu SC, Popescu GV. (Conference Paper) PAG30 January 16th, 2023(https://pag.confex.com/pag/30/poster/papers/viewonly.cgi?password=129251&username=47524)
13. “Gene (Co)Expression Networks and Alternate Transcripts Induced in Cotton in Response to Aspergillus Flavus Infection” Verma, Mohit; Baisakh, Niranjan; Labonte, Don R; Rajasekaran Kanniah. (Conference paper) 7th Annual MU Plant Research Symposium, University of Missouri-Columbia, MO, March 7th, 2023.
15. “Towards development of drought-tolerant rice for row rice production system in Louisiana”, Baisakh, Niranjan; Yabes, Jonalyn; Gutierrez, Andres; Verma, Mohit; Sevilla, Noah; Tabien, Rodante; Famoso, Adam; Harrell, Dustin; Linscombe, Steve. (Conference paper) Sugarcane field day, St. Gabriel, Baton Rouge, Louisiana 17th July 2019.
16. “Genome-wide association mapping identifies markers associated with cane yield components and sucrose traits in the Louisiana sugarcane core collection”. Genomics Volume 111, Issue 6, December 2019, Pages 1794-1801. Nathanael Fickett, Andres Gutierrez, Mohit Verma, Michael Pontif, Anna Hale, Collins Kimbeng, And Niranjan Baisakh*
17. “Insights into PPR Gene Family in Cajanus cajan and Other Legume Species” Journal Data Mining Genomics Proteomics 2016, 7:3 http://dx.doi.org/10.4172/2153-0602.1000203.Parampreet Kaur, Mohit Verma, Pavan K Chaduvula, Swati Saxena, Nikita Baliyan, Alim Junaid, Ajay K Mahato, Nagendra Kumar Singh and Kishor Gaikwad*
18. “De novo transcriptome assembly and comprehensive expression profiling in Crocus sativus to gain insights into apocarotenoid biosynthesis” Scientific Reports 6, Article number: 22456 (2016) doi:10.1038/srep22456. Mukesh Jain*, Prabhakar Lal Srivastava, Mohit Verma, Rajesh Gangal and Rohini Garg.
19. “Integrative analysis of coding genes and long non-coding lincRNAs in Prostate cancer.” PlOSone 05/2015; 10(5): e0122143. DO: 101371/journal.pone.0122143. Puspinder singhbaba, Sanjna sharma, Mohit Verma, Saurabh Gupta, R. Srivatsan, Vibha tyagi, Subhashini Srinivasan*
20. “Development of Genome-wide informative simple Sequence repeat markers for Large-scale genotyping applications in chickpea and development of web resource.” Frontiers Plant Science 09/2015; DOI:10.3389/fpls.2015.00645. Swarup Kumar Parida, Mohit Verma, Santosh Kumar Yadav, Supriya Das, Rohini Garg and Mukesh Jain*
21. “CTDB: An Integrated Chickpea Transcriptome Database for Functional and Applied Genomics.” PLOSone DOI: 10.1371/journal.pone.0136880 August 31, 2015. Mohit Verma, Vinay Kumar, Ravi Patel, Rohini Garg, Mukesh Jain*
22. “Transcriptome analysis of Catharanthus roses for gene discovery and expression profiling” in PLoS One (July 2014 volume 9, issue 7, e103583). Mohit Verma, Rajesh Gangal, Raghvendra Sharma, Alok Sinha and Mukesh Jain*
23. “Deep Transcriptome Sequencing of Wild Halophyte Rice, Porteresia coarctata, Provides Novel Insights into the Salinity and Submergence Tolerance Factors” in DNA Research 2013, 1-16. Rohini Garg, Mohit Verma, Shashank Agrawal, Rama Shankar, Manoj Majee and Mukesh Jain*
24. “Genome-wide Profiling of RNA splicing in Prostate tumor from RNA-seq data using virtual microarrays” in Clinical Bioinformatics in BMC 2012,2:21(26 November 2012). Subhashini Srinivasan*, Arun Patil, Mohit Verma, Jonathan L. Bingham, Srivatsan R.
25. “From data repositories to potential biomarkers: application to prostate cancer” (1111) April2012, 102 in Scientific Correspondence of CURRENT SCIENCE Volume 102, Issue 8, April 25, 2012. Arun H. Patil, Manjari Deshmukh, Neeraj K. Singh, Roli Srivastava, K. Satya Swati, Mohit Verma, Saurabh Gupta, S. Veeresh, R. Srivatsan, Subhashini Srinivasan*
26. The Draft Genome of a C4 Dicot, Amaranths hypochondriacs. International Plat and Animal Genome Conference XXI 2013 (Conference Paper). Meeta Sunil, Arun K. Hariharan, Soumya Nayak, Neeraja M. Krishnan, Jayanth Balakuntla, Kunal Dhas, Mohit Verma, Saurabh Gupta, Manjari Deshmukh, Swetansu Pattnail, Ravi P. Gupta, Bibha Choudhary, Binay Panda, Subhshini Srinivasan*
